PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014984m
Common NameCICLE_v10014984mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 502aa    MW: 54184.2 Da    PI: 6.0599
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014984mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31254312259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Ciclev10014984m 254 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 312
                      699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-31247314IPR003657WRKY domain
PROSITE profilePS5081133.109248314IPR003657WRKY domain
SuperFamilySSF1182903.4E-26251314IPR003657WRKY domain
SMARTSM007741.4E-37253313IPR003657WRKY domain
PfamPF031061.1E-25255312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MCSFFGVEME NYQGDLTDII RAGGRQIGSN NSASVSASSS SASVVSASDH LNNPLPTWQF  60
PSDPLSFCSS IDDNRENLFG DPFSNTRDPL LHELNIPNSS GYYAPPPLPP ADRVVDHEAA  120
TAASNINIGR RHHHQRGLFH EDELKSPCNI FSRIQISPSS QSPKQQPAVS PCESPVIAAA  180
ASPRGIKTPV VVASDMINAN STSKSCLVDN TGPAQISSPR NLGIKRRKSQ AKKVVCIPAP  240
AAANSRSSGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS SSKGCSARKQ VERSRTDPNM  300
LVITYTSEHN HPWPTQRNAL AGSTRSQPSK ANAAAKGSVS PSSHQPPQNT TTNNSNTKEN  360
VKESSNDTTT LSPSNNNFNA APSSSTSVKE EIEEIEKPID DDQMEGADLD EFSEGFSSSH  420
EIYKPALPDS NQSHEDFFAD LGEIEADPLN LLFSQGFSTG DHENKGTRVL DPFNIFDWSG  480
DNNNNNSSSS NTSFGETKRG L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-162553141977Probable WRKY transcription factor 4
2ayd_A1e-162523141374WRKY transcription factor 1
2lex_A1e-162553141977Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448817.10.0hypothetical protein CICLE_v10014984mg
TrEMBLV4U7V40.0V4U7V4_9R
STRINGPOPTR_0001s46490.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-80WRKY DNA-binding protein 14